TISIDB

Summary
Symbol	CYP4F11
Name	cytochrome P450, family 4, subfamily F, polypeptide 11
Aliases	cytochrome P450, subfamily IVF, polypeptide 11; CYPIVF11; 3-hydroxy fatty acids omega-hydroxylase CYP4F11; c ......
Chromosomal Location	19p13.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Basic function annotation. > Subcellular Location, Domain and Function > Gene Ontology > KEGG and Reactome Pathway

> Subcellular Location, Domain and Function [ TOP ]
Subcellular Location	Microsome membrane Single-pass membrane protein
Domain	PF00067 Cytochrome P450
Function	Omega-hydroxylase that oxidizes a variety of structurally unrelated compounds, including fatty acids and xenobiotics. Plays a key role in vitamin K catabolism by mediating omega-hydroxylation of vitamin K1 (phylloquinone), and menaquinone-4 (MK-4), a form of vitamin K2. Hydroxylation of phylloquinone and MK-4 probably regulates blood coagulation (PubMed:24138531). Catalyzes omega-hydroxylation of 3-hydroxy fatty acids, such as 3-hydroxypalmitate, 3-hydroxyoleate, 3-hydroxyarachidonate, and 3-hydroxystearate (PubMed:18065749, PubMed:19932081). Oxidizes drugs such as erythromycin, benzphetamine, ethylmorphine, chlorpromazine and imipramine (PubMed:15364545).

> Gene Ontology [ TOP ]
Biological Process	GO:0006732 coenzyme metabolic process GO:0006766 vitamin metabolic process GO:0006775 fat-soluble vitamin metabolic process GO:0007596 blood coagulation GO:0007599 hemostasis GO:0009109 coenzyme catabolic process GO:0009111 vitamin catabolic process GO:0009233 menaquinone metabolic process GO:0042180 cellular ketone metabolic process GO:0042182 ketone catabolic process GO:0042361 menaquinone catabolic process GO:0042363 fat-soluble vitamin catabolic process GO:0042373 vitamin K metabolic process GO:0042374 phylloquinone metabolic process GO:0042376 phylloquinone catabolic process GO:0042377 vitamin K catabolic process GO:0044282 small molecule catabolic process GO:0050817 coagulation GO:0050878 regulation of body fluid levels GO:0051186 cofactor metabolic process GO:0051187 cofactor catabolic process GO:1901661 quinone metabolic process GO:1901662 quinone catabolic process
Molecular Function	GO:0004497 monooxygenase activity GO:0005506 iron ion binding GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen GO:0020037 heme binding GO:0046906 tetrapyrrole binding
Cellular Component	-

> KEGG and Reactome Pathway [ TOP ]
KEGG	-
Reactome	R-HSA-2142753: Arachidonic acid metabolism R-HSA-211859: Biological oxidations R-HSA-211897: Cytochrome P450 - arranged by substrate type R-HSA-211979: Eicosanoids R-HSA-211935: Fatty acids R-HSA-1430728: Metabolism R-HSA-556833: Metabolism of lipids and lipoproteins R-HSA-211958: Miscellaneous substrates R-HSA-211945: Phase 1 - Functionalization of compounds R-HSA-2142691: Synthesis of Leukotrienes (LT) and Eoxins (EX)

> KEGG and Reactome Pathway

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KEGG

Reactome

R-HSA-2142753: Arachidonic acid metabolism
R-HSA-211859: Biological oxidations
R-HSA-211897: Cytochrome P450 - arranged by substrate type
R-HSA-211979: Eicosanoids
R-HSA-211935: Fatty acids
R-HSA-1430728: Metabolism
R-HSA-556833: Metabolism of lipids and lipoproteins
R-HSA-211958: Miscellaneous substrates
R-HSA-211945: Phase 1 - Functionalization of compounds
R-HSA-2142691: Synthesis of Leukotrienes (LT) and Eoxins (EX)

Summary
Symbol	CYP4F11
Name	cytochrome P450, family 4, subfamily F, polypeptide 11
Aliases	cytochrome P450, subfamily IVF, polypeptide 11; CYPIVF11; 3-hydroxy fatty acids omega-hydroxylase CYP4F11; c ......
Chromosomal Location	19p13.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Literatures that report relations between CYP4F11 and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells.

> Text Mining [ TOP ]
There is no record.

Summary
Symbol	CYP4F11
Name	cytochrome P450, family 4, subfamily F, polypeptide 11
Aliases	cytochrome P450, subfamily IVF, polypeptide 11; CYPIVF11; 3-hydroxy fatty acids omega-hydroxylase CYP4F11; c ......
Chromosomal Location	19p13.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets.

> High-throughput Screening

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Statistical results of CYP4F11 in screening data sets for detecting immune reponses.

PMID	Screening System	Cancer Type	Cell Line	Data Set	Statistical Results	Relation to immunity
29301958	CRISPR-Cas9	melanoma	B16F10	Pmel-1 T cell	NA/NS	NA/NS
29301958	CRISPR-Cas9	melanoma	B16F10	OT-1 T cell	NA/NS	NA/NS
28783722	CRISPR-Cas9	melanoma	Mel624	2CT-CRISPR	Second most enriched score: 0.54	Sensitive to T cell-mediated killing
28723893	CRISPR-Cas9	melanoma	B16	GVAX+Anti-PD1	NA/NS	NA/NS
28723893	CRISPR-Cas9	melanoma	B16	GVAX	NA/NS	NA/NS
25691366	RNAi	Breast cancer	MCF7	Luc-CTL assay	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Primary screen	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Secondary screen	NA/NS	NA/NS

Summary
Symbol	CYP4F11
Name	cytochrome P450, family 4, subfamily F, polypeptide 11
Aliases	cytochrome P450, subfamily IVF, polypeptide 11; CYPIVF11; 3-hydroxy fatty acids omega-hydroxylase CYP4F11; c ......
Chromosomal Location	19p13.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets. > Expression difference between responders and non-responders > Mutation difference between responders and non-responders

> Expression difference between responders and non-responders

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Points in the above scatter plot represent the expression difference of CYP4F11 in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	Log2 (Fold Change)	P value
1	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	14	12	0.859	0.0438
2	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	6	5	0.029	0.966
3	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	7	1.481	0.0175
4	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	0.168	0.723
5	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	0.407	0.821
6	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	-0.15	0.935
7	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	26	23	1.042	0.265
8	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	15	11	0.476	0.764
9	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	11	12	1.492	0.337
10	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	4	8	-1.265	0.166
11	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	2	0	0	1
12	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	2	8	-1.797	0.137
13	29443960	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	68	230	-0.524	0.153

> Mutation difference between responders and non-responders

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Points in the above scatter plot represent the mutation difference of CYP4F11 in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	% Mut/Res	% Mut/NRes	% Diff (R vs NR)	Pval
1	25765070	Non-small cell lung cancer (NSCLC)	all	Anti-PD-1 (pembrolizumab)	14	17	0	0	0	1
2	25765070	Non-small cell lung cancer (NSCLC)	smoking	Anti-PD-1 (pembrolizumab)	10	3	0	0	0	1
3	25765070	Non-small cell lung cancer (NSCLC)	non-smoking	Anti-PD-1 (pembrolizumab)	4	14	0	0	0	1
4	26359337	Melanoma	all	Anti-CTLA-4 (ipilimumab)	27	73	0	1.4	-1.4	1
5	26359337	Melanoma	BRAFi	Anti-CTLA-4 (ipilimumab)	0	14	0	7.1	-7.1	1
6	26359337	Melanoma	non-BRAFi	Anti-CTLA-4 (ipilimumab)	27	59	0	0	0	1
7	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	21	17	23.8	17.6	6.2	0.709
8	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	6	12.5	0	12.5	1
9	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	13	11	30.8	27.3	3.5	1
10	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	0	0	0	1
11	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	0	0	0	1
12	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	0	0	0	1
13	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	38	27	2.6	3.7	-1.1	1
14	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	22	13	4.5	0	4.5	1
15	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	16	14	0	7.1	-7.1	0.467
16	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	11	13	0	0	0	1
17	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	6	1	0	0	0	1
18	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	5	12	0	0	0	1

Summary
Symbol	CYP4F11
Name	cytochrome P450, family 4, subfamily F, polypeptide 11
Aliases	cytochrome P450, subfamily IVF, polypeptide 11; CYPIVF11; 3-hydroxy fatty acids omega-hydroxylase CYP4F11; c ......
Chromosomal Location	19p13.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of CYP4F11. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene.

> Lymphocyte [ TOP ]

Summary
Symbol	CYP4F11
Name	cytochrome P450, family 4, subfamily F, polypeptide 11
Aliases	cytochrome P450, subfamily IVF, polypeptide 11; CYPIVF11; 3-hydroxy fatty acids omega-hydroxylase CYP4F11; c ......
Chromosomal Location	19p13.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of CYP4F11. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by CYP4F11. > Immunoinhibitor > Immunostimulator > MHC molecule

> Immunoinhibitor [ TOP ]

> Immunostimulator [ TOP ]

> MHC molecule [ TOP ]

Summary
Symbol	CYP4F11
Name	cytochrome P450, family 4, subfamily F, polypeptide 11
Aliases	cytochrome P450, subfamily IVF, polypeptide 11; CYPIVF11; 3-hydroxy fatty acids omega-hydroxylase CYP4F11; c ......
Chromosomal Location	19p13.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of CYP4F11. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene. > Chemokine > Receptor

> Chemokine [ TOP ]

> Receptor [ TOP ]

Summary
Symbol	CYP4F11
Name	cytochrome P450, family 4, subfamily F, polypeptide 11
Aliases	cytochrome P450, subfamily IVF, polypeptide 11; CYPIVF11; 3-hydroxy fatty acids omega-hydroxylase CYP4F11; c ......
Chromosomal Location	19p13.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Distribution of CYP4F11 expression across immune and molecular subtypes. > Immune subtype > Molecular subtype

> Immune subtype [ TOP ]

> Molecular subtype [ TOP ]

Summary
Symbol	CYP4F11
Name	cytochrome P450, family 4, subfamily F, polypeptide 11
Aliases	cytochrome P450, subfamily IVF, polypeptide 11; CYPIVF11; 3-hydroxy fatty acids omega-hydroxylase CYP4F11; c ......
Chromosomal Location	19p13.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Associations between CYP4F11 and clinical features. > Overall survival analysis > Cancer stage > Tumor grade

> Overall survival [ TOP ]

> Stage [ TOP ]

> Grade [ TOP ]

Summary
Symbol	CYP4F11
Name	cytochrome P450, family 4, subfamily F, polypeptide 11
Aliases	cytochrome P450, subfamily IVF, polypeptide 11; CYPIVF11; 3-hydroxy fatty acids omega-hydroxylase CYP4F11; c ......
Chromosomal Location	19p13.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Drugs targeting CYP4F11 collected from DrugBank database.

> Drugs from DrugBank database [ TOP ]
There is no record.

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